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cell-annotator

  • API Reference
    • cell_annotator.CellAnnotator
    • cell_annotator.SampleAnnotator
    • cell_annotator.BaseAnnotator
  • Changelog
  • Contributing guide
  • References
  • Tutorials
    • Annotating the heart atlas
    • Annotating human BMMCs
    • Annotating spatial data (mouse organogenesis)

Index

A | B | C | G | H | L | M | Q | S | T

A

  • annotate_clusters() (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)
  • api_keys (cell_annotator.BaseAnnotator attribute)
    • (cell_annotator.CellAnnotator attribute)
    • (cell_annotator.SampleAnnotator attribute)

B

  • BaseAnnotator (class in cell_annotator)

C

  • cell_annotator
    • module
  • CellAnnotator (class in cell_annotator)
  • check_api_access() (cell_annotator.BaseAnnotator method)
    • (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)

G

  • get_cluster_markers() (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)
  • get_expected_cell_type_markers() (cell_annotator.CellAnnotator method)

H

  • harmonize_annotations() (cell_annotator.SampleAnnotator method)

L

  • list_available_models() (cell_annotator.BaseAnnotator method)
    • (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)

M

  • module
    • cell_annotator

Q

  • query_llm() (cell_annotator.BaseAnnotator method)
    • (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)

S

  • SampleAnnotator (class in cell_annotator)

T

  • test_query() (cell_annotator.BaseAnnotator method)
    • (cell_annotator.CellAnnotator method)
    • (cell_annotator.SampleAnnotator method)

By Marius Lange

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