API Reference

The class CellAnnotator is the main class that users interact with:

CellAnnotator(adata, species, tissue[, ...])

Main class for annotating cell types across multiple samples.

The following classes are more technical; SampleAnnotator is called under the hood for each sample, and BaseAnnotator contains basic functionality.

SampleAnnotator(adata, sample_name, species, ...)	Handles cell type annotation for a single sample/batch.
BaseAnnotator(species, tissue[, stage, ...])	Shared base class for annotation-related functionality.